User:Skang

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Automated Testing Script bccd@node000:~$ bccd-test-suite

  1. 567 passed
  2. 651 passed
  3. 658 passed
  4. 666 passed
  5. 771 passed
  6. 780 passed - /etc/vim files exist

[sudo] password for bccd: Sorry, try again. [sudo] password for bccd:

  1. 781 passed
  2. 786 passed - bccd user in video group
  3. 788 passed - R
  4. 790 passed - pypar
  5. 790 passed - mpi4py
  6. 795 passed
  7. 794 passed
  8. 802 passed
  9. 803 passed
  10. 806 passed
  11. 811 passed
  12. 813 passed
  13. 983 passed
  14. 819 passed
  15. 822 passed

Liberation Test: bccd@node000:~$ sudo perl /root/liberate.pl --libdev /dev/sda

We trust you have received the usual lecture from the local System Administrator. It usually boils down to these three things:

   #1) Respect the privacy of others.
   #2) Think before you type.
   #3) With great power comes great responsibility.

[sudo] password for bccd: umount: /mnt/dev/sdb2: not found Couldn't unmount /mnt/dev/sdb2 ok 0 - Unmounting all auto-mounted filesystems. ok 1 - Getting total system RAM. ok 2 - Getting libdev size. Are you sure you want to remove these logical volumes (y/n)?

 /dev/bccd/swap bccd 3 1 -1 0 15015936 1833 -1 0 -1 254 0
 /dev/bccd/slash bccd 3 1 -1 0 916111360 111830 -1 0 -1 254 1

y ok 3 - Removed all LVM data from all attached disks. 1+0 records in 1+0 records out 512 bytes (512 B) copied, 0.000112969 s, 4.5 MB/s ok 4 - Zeroed partition table for /dev/sda. ok 5 - Cleared partition table for /dev/sda. ok 6 - Setup /boot for /dev/sda. ok 7 - Setup partition for LVM PV. ok 8 - Set LVM PV partition type. ok 9 - partprobe just in case. ok 10 - Created LVM PV on /dev/sda2 ok 11 - Created VG bccd with /dev/sda2 ok 12 - Created swap LV within VG bccd . ok 13 - Created / LV within VG bccd. ok 14 - Marked swap LV for swap use. mke2fs 1.41.12 (17-May-2010) y ok 15 - Made filesystem for /. mke2fs 1.41.12 (17-May-2010) ok 16 - Made filesystem for /boot. ok 17 - mkdir /liberate. ok 18 - Mounted liberating / at /liberate. ok 19 - mkdir /liberate/aufs. ok 20 - mkdir /liberate/boot. ok 21 - Mounted liberating /boot at /liberate/boot. ok 22 - mkdir /liberate//dev

ok 23 - Bind mounting /dev to /liberate. ok 24 - mkdir /liberate//proc

ok 25 - Bind mounting /proc to /liberate. ok 26 - mkdir /liberate//sys

ok 27 - Bind mounting /sys to /liberate. ok 28 - Copied /UNIONFS to /liberate ok 29 - Made valid mtab entries. Searching for GRUB installation directory ... found: /boot/grub ok 30 - Installed grub into MBR. ok 31 - Made PNM splash screen. ok 32 - Installed grub menu. W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168g-3.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168g-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8106e-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8106e-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8411-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8411-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8402-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168f-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168f-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8105e-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168e-3.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168e-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168e-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168d-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168d-1.fw for module r8169 ok 33 - Created regular initramfs. W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168g-3.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168g-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8106e-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8106e-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8411-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8411-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8402-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168f-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168f-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8105e-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168e-3.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168e-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168e-1.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168d-2.fw for module r8169 W: Possible missing firmware /lib/firmware/rtl_nic/rtl8168d-1.fw for module r8169 ok 34 - Created diskless initramfs. ok 35 - Copied boot kernel to diskless kernel. usermod: no changes ok 36 - Altering non-root account bccd directory for liberation. ok 37 - Replacing exports file. ok 38 - Made us LIBERATED. ok 39 - Removed old ssh keys. ok 40 - Removed NAT configuration. ok 41 - chmod 0700 /liberate/root/.ssh/ ok 42 - Generated passwordless root ssh keys. ok 43 - Appended public key to root authorized key list. ok 44 - mkdir /liberate/home//.ssh/ for new user. ok 45 - chmod 0700 /liberate/home//.ssh/ for new user. ok 46 - Appended public key to authorized user key list in /liberate/home//bccd/.ssh/authorized_keys. ok 47 - Generated valid /etc/mtab. ok 48 - Set / to perms 0755. ok 49 - Set /lib to perms 0755. update-rc.d: warning: ssh start runlevel arguments (2 3) do not match LSB Default-Start values (2 3 4 5) update-rc.d: warning: ssh stop runlevel arguments (none) do not match LSB Default-Stop values (0 1 6) ok 50 - Set ssh to start on both master and slave nodes. update-rc.d: warning: nfs-common start runlevel arguments (2 3) do not match LSB Default-Start values (2 3 4 5 S) update-rc.d: warning: nfs-common stop runlevel arguments (none) do not match LSB Default-Stop values (0 1 6) ok 51 - Set nfs-common to start on both master and slave nodes. update-rc.d: warning: tftpd-hpa start runlevel arguments (2 3) do not match LSB Default-Start values (2 3 4 5) update-rc.d: warning: tftpd-hpa stop runlevel arguments (none) do not match LSB Default-Stop values (1) ok 52 - Set tftpd-hpa to start on both master and slave nodes. ok 53 - Removing old /boot symlink. Searching for GRUB installation directory ... found: /boot/grub Searching for default file ... found: /boot/grub/default Testing for an existing GRUB menu.lst file ... found: /boot/grub/menu.lst Searching for splash image ... none found, skipping ... Found kernel: /vmlinuz-3.14.0bccd-gbb71e91 Updating /boot/grub/menu.lst ... done

ok 54 - Updating grub menu with kernel info. ok 55 - Removed pre-fetch liberation directory. ok 56 - Opened /liberate/etc/fstab ok 57 - Opened /liberate/etc/fstab ok 58 - mkdir /liberate//diskless/bccd/etc/network ok 59 - Moved interfaces.compute to /liberate//diskless/bccd/etc/network ok 60 - chown'd /liberate/home//bccd to bccd:bccd ok 61 - Setting permissions for /liberate/home/ to 0755. update-rc.d: warning: nfs-kernel-server stop runlevel arguments (none) do not match LSB Default-Stop values (0 1 6) ok 62 - Enabled nfs-kernel-server in /liberate. update-rc.d: warning: nfs-common start runlevel arguments (2 3 4 5) do not match LSB Default-Start values (2 3 4 5 S) update-rc.d: warning: nfs-common stop runlevel arguments (none) do not match LSB Default-Stop values (0 1 6) ok 63 - Enabled nfs-common in /liberate. update-rc.d: warning: isc-dhcp-server stop runlevel arguments (none) do not match LSB Default-Stop values (0 1 6) ok 64 - Enabled isc-dhcp-server in /liberate. ok 65 - Disabled bccd-condor in /liberate. Passed 66 out of 66 total tests.

  1. 823 passed
  2. 825 passed
  3. 828 passed

grep: /var/mail/bccd: No such file or directory

  1. 829 passed
  2. 830 passed
  3. 831 passed
  4. 832 passed
  5. 798 passed
  6. 801 FAILED

cudaDriverGetVersion() FAILED, status = 38 (no CUDA-capable device is detected) CUDA FAILED ASROCK USB support passed sudoers mail passed cron email disabled passed

  1. 884 passed
  2. 897 passed


R test bccd@node000:~$ module load R bccd@node000:~$ R

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.

 Natural language support but running in an English locale

R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.

> # > > Inf - Inf [1] NaN > [1] NaN Error: unexpected '[' in " [" > > Inf - Inf = NaN Error in Inf - Inf = NaN :

 target of assignment expands to non-language object

> Inf - Inf [1] NaN > q() Save workspace image? [y/n/c]: n


Liberation Test bccd@node000:~$ bccd-version Revision: 3.3.4-skylar.5989

Build date: 2018-1-25

bccd@node000:~$ cat /etc/bccd-stage LIBERATED bccd@node000:~$ sudo bccd-reset-network [sudo] password for bccd: Stopping ISC DHCP server: dhcpd failed! Deconfiguring network interfaces...Internet Systems Consortium DHCP Client 4.1.1-P1 Copyright 2004-2010 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/

Listening on LPF/eth0/00:60:6e:05:20:5b Sending on LPF/eth0/00:60:6e:05:20:5b Sending on Socket/fallback DHCPRELEASE on eth0 to 204.85.28.12 port 67 done. dhclient: no process found ok 0 - Removing /var/lib/dhcp/dhclient.eth0.leases. ok 1 - Removing /var/lib/dhcp/dhclient.leases. Internet Systems Consortium DHCP Client 4.1.1-P1 Copyright 2004-2010 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/

Listening on LPF/eth0/00:60:6e:05:20:5b Sending on LPF/eth0/00:60:6e:05:20:5b Sending on Socket/fallback DHCPDISCOVER on eth0 to 255.255.255.255 port 67 interval 7 DHCPOFFER from 204.85.28.12: no bccd-identifier option. DHCPDISCOVER on eth0 to 255.255.255.255 port 67 interval 4 DHCPOFFER from 204.85.28.12: no bccd-identifier option. No DHCPOFFERS received. Unable to obtain a lease on first try. Exiting. not ok 2 - Running dhclient -cf /etc/dhcp/dhclient.conf-bccd -1 eth0 -v.,<NO OUTPUT> /bin/bccd-nic-setup: NOTICE: run_nic_dhcp: Insufficient IP information: $VAR1 = {};

at /bin/bccd-nic-setup line 43

dhclient: no process found ok 3 - Removing /var/lib/dhcp/dhclient.leases. Internet Systems Consortium DHCP Client 4.1.1-P1 Copyright 2004-2010 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/

Listening on LPF/eth0/00:60:6e:05:20:5b Sending on LPF/eth0/00:60:6e:05:20:5b Sending on Socket/fallback DHCPDISCOVER on eth0 to 255.255.255.255 port 67 interval 4 DHCPOFFER from 204.85.28.12 DHCPREQUEST on eth0 to 255.255.255.255 port 67 DHCPACK from 204.85.28.12 bound to 204.85.29.145 -- renewal in 131 seconds. ok 4 - Running dhclient -cf /etc/dhcp/dhclient.conf-any -1 eth0 -v. ok 5 - Removing /var/lib/dhcp/dhclient.leases. Internet Systems Consortium DHCP Client 4.1.1-P1 Copyright 2004-2010 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/

Listening on LPF/eth1/d0:50:99:25:6e:a3 Sending on LPF/eth1/d0:50:99:25:6e:a3 Sending on Socket/fallback DHCPDISCOVER on eth1 to 255.255.255.255 port 67 interval 7 DHCPDISCOVER on eth1 to 255.255.255.255 port 67 interval 4 No DHCPOFFERS received. Unable to obtain a lease on first try. Exiting. not ok 6 - Running dhclient -cf /etc/dhcp/dhclient.conf-bccd -1 eth1 -v.,<NO OUTPUT> /bin/bccd-nic-setup: NOTICE: run_nic_dhcp: Insufficient IP information: $VAR1 = {};

Configure NICS
qqqqqlqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqkqqqqqqqq
     x No DHCP found for network on eth1, do you wish to accept      x  
     x auto-configuration? (Say NO to configure PXE/diskless         x  
     x booting.)                                                     x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     x                                                               x  
     tqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqu  
     x                   < Yes >          < No  >                    x  
     mqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqj  
       

ok 9 - Unlinking dhclient.conf for BCCD. ok 10 - Relinking dhclient.conf for BCCD. /bin/bccd-nic-setup: NOTICE: config_dhcp: Set DHCP server to start.

at /bin/bccd-nic-setup line 49

Running /etc/init.d/networking restart is deprecated because it may not enable again some interfaces ... (warning). Reconfiguring network interfaces...Internet Systems Consortium DHCP Client 4.1.1-P1 Copyright 2004-2010 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/

Listening on LPF/eth0/00:60:6e:05:20:5b Sending on LPF/eth0/00:60:6e:05:20:5b Sending on Socket/fallback Internet Systems Consortium DHCP Client 4.1.1-P1 Copyright 2004-2010 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/

Listening on LPF/eth0/00:60:6e:05:20:5b Sending on LPF/eth0/00:60:6e:05:20:5b Sending on Socket/fallback DHCPDISCOVER on eth0 to 255.255.255.255 port 67 interval 5 DHCPOFFER from 204.85.28.12 DHCPREQUEST on eth0 to 255.255.255.255 port 67 DHCPACK from 204.85.28.12 bound to 204.85.29.145 -- renewal in 129 seconds. if-up.d/mountnfs[eth0]: waiting for interface eth0 before doing NFS mounts ... (warning). if-up.d/mountnfs[eth0]: waiting for interface eth0:1 before doing NFS mounts ... (warning). iptables: No chain/target/match by that name. /bin/bccd-hostname: INFO: get_nic_ip: eth1 has no IP address

at /bin/bccd-hostname line 39

synapse-145.shodor.org SIOCSIFFLAGS: Cannot assign requested address if-up.d/mountnfs[eth0:1]: waiting for interface eth0:1 before doing NFS mounts ... (warning). iptables: No chain/target/match by that name. node000.bccd.net done. Starting ISC DHCP server: dhcpd. Starting HPA's tftpd: in.tftpd.



/proc Test Starting HPA's tftpd: in.tftpd. bccd@node000:~$ ssh node011 Warning: Permanently added 'node011' (RSA) to the list of known hosts. Linux node000.bccd.net 3.14.0bccd-gbb71e91 #2 SMP PREEMPT Wed Sep 17 20:50:06 EDT 2014 x86_64

The programs included with the Debian GNU/Linux system are free software; the exact distribution terms for each program are described in the individual files in /usr/share/doc/*/copyright.

Debian GNU/Linux comes with ABSOLUTELY NO WARRANTY, to the extent permitted by applicable law. Last login: Sat Mar 10 16:48:30 2018 bccd@node011:~$ ls/tmp -bash: ls/tmp: No such file or directory bccd@node011:~$ ls /tmp bccd ifconfig.yIcdGVqr mpd2.logfile_root ifconfig.TgOpK2uf mpd2.console_root bccd@node011:~$ ps

 PID TTY          TIME CMD
3409 pts/1    00:00:00 bash
3556 pts/1    00:00:00 ps

bccd@node011:~$


USB 2 Results

Bccd Suite Test: bccd@node000:~$ bccd-test-suite Built /home/bccd/GalaxSee w/ mpich2 Built /home/bccd/Life w/ mpich2 Built /home/bccd/GalaxSee w/ openmpi Built /home/bccd/Life w/ openmpi

  1. 947 passed

/proc test ssh: Could not resolve hostname node: Name or service not known bccd@node000:~$ ssh node011 Linux node000.bccd.net 3.14.0bccd-gbb71e91 #2 SMP PREEMPT Wed Sep 17 20:50:06 EDT 2014 x86_64

The programs included with the Debian GNU/Linux system are free software; the exact distribution terms for each program are described in the individual files in /usr/share/doc/*/copyright.

Debian GNU/Linux comes with ABSOLUTELY NO WARRANTY, to the extent permitted by applicable law. Last login: Sat Mar 10 17:38:11 2018 bccd@node011:~$ ps

 PID TTY          TIME CMD
3299 pts/1    00:00:00 bash
3395 pts/1    00:00:00 ps

bccd@node011:~$ ls /tmp bccd ifconfig.NdadH0xi mpd2.logfile_root ifconfig.JmahHsmv mpd2.console_root bccd@node011:~$ ps

 PID TTY          TIME CMD
3299 pts/1    00:00:00 bash
3486 pts/1    00:00:00 ps

bccd@node011:~$


R test

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.

 Natural language support but running in an English locale

R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.

> Inf - Inf [1] NaN > q() Save workspace image? [y/n/c]: n bccd@node000:~$ module unload R bccd@node000:~$

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